MmuEX0015489 @ mm10
Exon Skipping
Gene
ENSMUSG00000022102 | Dok2
Description
docking protein 2 [Source:MGI Symbol;Acc:MGI:1332623]
Coordinates
chr14:70775466-70776997:+
Coord C1 exon
chr14:70775466-70775747
Coord A exon
chr14:70775984-70776071
Coord C2 exon
chr14:70776816-70776997
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCCGGGACCTGCCTCCTCAGGGA
3' ss Score
7.13
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AAGTGGCGCCGGTTCGCAGCCGTGTTATATGGAGAGTCTGGCTGTGCCCTAGCCAGACTAGAGCTCCAGGATGTCCCCGAGAAGACACGGCGAGGAGAGGCCACTCGGAAGGTTGTCCGCCTCAGTGACTGCTTACGGGTAGCAGAGGTAGGCAGTGAGGCCAGCAGCCCCCGGGACACCAGTGCCTTCATCCTGGAGACCAAGGAGCGCCTGTACCTACTGGCAGCCCCCTCGGCAGAGCGCAGTGACTGGATACAGGCCATCTGCCTGTTGGCTTTCCCG
Seq A exon
GGACAGAGGAAAGGGTCACCAGGACTGGAGGAAAAGAGCGGCAGTCCCTGCATGGAGGAGAACGAGTTGTATAGCAGCTCCACCACAG
Seq C2 exon
GGCTCTGCAAGGAATATATGGTGACCATACGACCCACAGAAGCCAGTGAGCGCTGCCGGCTCCGAGGGTCCTATACTCTCCGGACCGGGGTGAGTGCCCTGGAGCTGTGGGGTGGCCCTGAGCCAGGCACACAGCTATATGACTGGCCCTACAGGTTTCTTCGACGCTTTGGGCGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022102-'9-25,'9-21,12-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.433 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(83.5=96.8)
A:
NO
C2:
PF0217412=IRS=PU(58.0=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCAGAGGTAGGCAGTGA
R:
TGTGGGTCGTATGGTCACCAT
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types