GgaEX7011505 @ galGal4
Exon Skipping
Gene
ENSGALG00000026250 | DOK2
Description
docking protein 2, 56kDa [Source:HGNC Symbol;Acc:HGNC:2991]
Coordinates
chr22:1378151-1379958:+
Coord C1 exon
chr22:1378151-1378432
Coord A exon
chr22:1379457-1379556
Coord C2 exon
chr22:1379780-1379958
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCCTCACTCCTTCCTTGCAGAGG
3' ss Score
10.78
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAATGGAAGAAGTATTGGGGCGTTCTGTACCGGGAATCCTCCTGCTCCACCGCCCGCCTGGAGCTCTTCGAAAGCGCCGACAAACCGCGGAAGGGCGAGAGCAGCCGACGCCTGGTGAGGCTGAGCGACTGCGTGCACGTGGCCGAGGTGGGTGGGGAGGCGGGCTGCCCCCGCGCCACGGCCCCCTTCCTGCTGGAGACCACCGAGAAGCGGTACCTGCTGGCAGCAGAGGGCGGCGAGGTGGAGGAATGGGTGAGGAGGCTGTGCCAGCTGGCGTTCCCG
Seq A exon
AGGAGCCAGGAGGAGCAGGCGGTGGGGAAGGACAGACAGCTGAGCTCCGACGGCGAGTTCTCCATGGCTGAAAACTCCCTGTACAGCTCCCGGGGCAAAG
Seq C2 exon
GCGTGGAGCACGACTTCGAGGTGACGCTGAGGGCCACCGAGTCCTCGGAGCGCTGCCGCCTGCGGGGCCGCTTCGTGCTGCGGGCGGGCGAGGAAGCCTTGGAGCTGCGGGACGTGCAGAGCAGGGATGTCCTTTACAGCTGGCCCTACCGCTTCCTGAGGCGCTTCGGGAGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026250-'4-2,'4-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(79.3=97.9)
A:
NO
C2:
PF0217412=IRS=PU(58.0=96.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGAGACCACCGAGAAG
R:
GGTAGGGCCAGCTGTAAAGGA
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]