RnoEX0029426 @ rn6
Exon Skipping
Gene
ENSRNOG00000013922 | Dok2
Description
docking protein 2 [Source:RGD Symbol;Acc:1310966]
Coordinates
chr15:52452354-52453886:+
Coord C1 exon
chr15:52452354-52452635
Coord A exon
chr15:52452868-52452955
Coord C2 exon
chr15:52453705-52453886
Length
88 bp
Sequences
Splice sites
3' ss Seq
GGGACCGTCTGCCTCCTCAGGGG
3' ss Score
6.54
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AAGTGGCGCCGGTTCACAGCCGTGTTATATGGAGAGTCTGGCTGTGCCCTAGCCAGACTAGAGCTCCAGGATGGCCCGGAGAAGACACGTCGAGGAGAGGCCACTCGGAAGGTTGTTCGCCTCAGTGACTGCTTACGGGTAGCAGAGGTAGGCAGTGAGGCCAGCAGTCCCCGGGACACCAGTGCCTTCATCCTGGAGACCAAGGAGCGTCTGTACCTGCTGGCAGCCCCCTCAACAGAGCGCAGTGATTGGATACAGGCCATCTGCCTGTTGGCTTTCCCG
Seq A exon
GGGCAGAGGAAAGAGTCACCAGGTCTGGAGGAAAAGAATGGCAGTCCCTGCATGGAGGAGAATGAGTTGTATAGCAGCTCTACTACAG
Seq C2 exon
GGGTCTGCAAGGAATATGCAGTGACCATACGACCCACAGAAGCCAGTGAGCGCTGCCGGCTCCGAGGGTCCTATACTCTCCGGACCGGGGTGAGTGCCCTGGAGCTGTGGGGTGGCCCTGAGCCAGGCACACAGCTATATGACTGGCCCTACAGGTTTCTGCGACGATTTGGGCGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013922-'3-10,'3-9,5-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.533 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(83.5=96.8)
A:
NO
C2:
PF0217412=IRS=PU(58.0=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTCATCCTGGAGACCAA
R:
GAGTATAGGACCCTCGGAGCC
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]