BtaEX6035671 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96325678-96332604:-
Coord C1 exon
chr8:96332512-96332604
Coord A exon
chr8:96327675-96327915
Coord C2 exon
chr8:96325678-96325817
Length
241 bp
Sequences
Splice sites
3' ss Seq
CCGCCTGCTCCCTCCCCCAGCTG
3' ss Score
9.96
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
ACAAAACTAAACTCTACATCTCTCTTCCCGACCGAGGAGCTGGGTGAAGCCACAAAAGCTTTGTTGGATAGTCTTGGGAATCTGGCCCAAGAG
Seq A exon
CTGTTCAGCATGAGGAGCTGGAGTGACATGCGGCAGGAGGTGATGTTTCTGACCAACGTGAACAGCTCCAGCTCCTCCACCCAGATCTACCAGGCCGTGTCCCGCATCATCTGCGGCCATCCCGAGGGCGGGGGCCTGAAGATCAAGTCCCTGAACTGGTACGAGGACAACAACTACAAGGCCCTCTTCGGAGGCAACGGCACGGAGGACGACGCTGGCACCGTCTATGACAACTCTACAT
Seq C2 exon
CTCCTTATTGCAATGATTTGATGAAGAATCTGGAGTCCAGTCCTCTTTCTCGCATCATATGGAAAGCTCTCAAGCCCCTGCTTGTTGGAAAGATCCTGTATACACCTGACACTCCAGTCACAAGGCGGCTTATGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAACTCTACATCTCTCTTCCCGA
R:
CTCAGTCATAAGCCGCCTTGT
Band lengths:
228-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]