RnoEX6021834 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69913232-69918926:-
Coord C1 exon
chr5:69918834-69918926
Coord A exon
chr5:69915445-69915685
Coord C2 exon
chr5:69913232-69913371
Length
241 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCACCCTGACACCAGCTC
3' ss Score
4.07
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ACAAAACTAAACTCCACGTCTCTTCTCCCGACCCAGCATCTGGCTGAAGCCACCACAACGTTGCTTGACAGCTTAGGGGGGCTGGCCCAAGAG
Seq A exon
CTCTTCAGCACAAAGAGCTGGAGCGACATGCGGCAGGAGGTGATGTTTCTGACCAACGTGAACAACTCCGGCTCCTCCACCCAGATATACCAGGCTGTGTCCCGAATCGTCTGTGGTCACCCAGAGGGCGGGGGCCTGAAGATCAAGTCCCTCAACTGGTACGAGGATAACAACTACAAAGCCCTCTTTGGAGGGAATGGCACCGAGGAAGACACAGACACCTTCTATGACAATTCTACAA
Seq C2 exon
CTCCTTATTGCAATGATTTGATGAAGAACTTGGAGTCTAGTCCTCTTTCTCGAATTATTTGGAAGGCACTCAAGCCACTGCTCATTGGGAAGATTCTGTATACACCTGACACACCAGCTACAAGGCAGGTCATGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'12-13,'12-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTAAACTCCACGTCTCTTCTCC
R:
TCAGCCATGACCTGCCTTGTA
Band lengths:
228-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]