MmuEX6093470 @ mm9
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53103126-53108549:-
Coord C1 exon
chr4:53108457-53108549
Coord A exon
chr4:53105601-53105841
Coord C2 exon
chr4:53103126-53103265
Length
241 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCACCCTGACACCAGCTG
3' ss Score
4.13
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ACAAAACTAAATTCCACATCTCATCTCCCGACCCAGCATCTGGCTGAAGCCACCACAGTGTTGCTTGACAGCTTGGGGGGCCTGGCCCAAGAG
Seq A exon
CTGTTCAGCACAAAGAGCTGGAGCGACATGCGGCAGGAGGTGATGTTTCTGACCAACGTGAACAGCTCCAGCTCCTCCACCCAGATCTACCAGGCAGTGTCCCGCATCGTGTGTGGTCACCCAGAGGGTGGGGGCCTGAAGATCAAGTCCCTCAACTGGTACGAGGATAACAACTACAAAGCCCTCTTTGGAGGGAATAACACCGAGGAAGACGTGGACACCTTCTATGACAATTCTACAA
Seq C2 exon
CTCCTTATTGCAATGATTTGATGAAGAACTTGGAGTCTAGTCCTCTTTCTCGAATTATTTGGAAGGCACTCAAGCCACTGCTTGTTGGAAAGATTCTCTATACACCTGACACACCAGCTACAAGGCAGGTCATGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(0.9=8.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTAAATTCCACATCTCATCTCCCG
R:
TCAGCCATGACCTGCCTTGTA
Band lengths:
228-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: