GgaEX6050603 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54581342-54586833:-
Coord C1 exon
chrZ:54586747-54586833
Coord A exon
chrZ:54582080-54582320
Coord C2 exon
chrZ:54581342-54581481
Length
241 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCCTTACTTCTCCAGCTG
3' ss Score
10.08
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGAGAAATTTTCTTTAATTCCTCCTTGCGGGATCTGTCAGAAACTGTGGAGGCTTTGAGGGACAGCCTGGGAAAGCTTGTCAAGGAG
Seq A exon
CTGCTGAGCATGAAGAGTTGGAGTGACATGAGGCAAGAGGTGATGTTCCTGACCAATGTGAATGCCTCAAACTCCTCTACACAGATCTACCAGGCTGTGTCACGCATTGTGTGTGGCCACCCTGAAGGTGGAGGGCTCAAGATTAAATCCCTCAACTGGTATGAGGACAATAATTACAAAGCACTGTTTGGAGGCAACAGCACTGAAGATGATGTAACTAATTTCTATGATAACTCCACAA
Seq C2 exon
CACCCTATTGCAATGAGCTGATGAAGAACCTGGAATCCAGCCCACTTTCCAGAATTATTTGGAGGGCTTTGAAACCTTTGCTGATTGGGAAGGTCTTGTACACTCCAGACACACCAGCCATAAGGAAGATCATGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'19-35,'19-34,22-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTTTAATTCCTCCTTGCGGGA
R:
CTCAGCCATGATCTTCCTTATGGC
Band lengths:
220-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]