DreEX0009870 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51950776-51958057:+
Coord C1 exon
chr1:51950776-51950865
Coord A exon
chr1:51957212-51957455
Coord C2 exon
chr1:51957918-51958057
Length
244 bp
Sequences
Splice sites
3' ss Seq
TGATTAAACGTGTTTCTCAGTTG
3' ss Score
5.27
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
AAAGATGTCAAGTCAGACCCAAAGATCATCAAAGATGTGTCCATTGCTACAGACAGTCTGCTGGAGAGTCTGGGGGCTTTGGCAGTGGAG
Seq A exon
TTGGCGAGTATGAAGAGCTGGCGCGACATGCGGAATGAGATCCTCTACCTGACGGGCAACAGCACGCAGTCACCAAACCACATGTACCAGGCCGTGTCCCGCATCGTCTGCGGCCATCCGGAGGGTGGCGGATTAAAGATCAAGTCCCTCAACTGGTTCGAAGACAATAACTACAAAGCCCTGTTCGGAAACAATGGCAACGACAGTGACAGCGAGCCCGCATCTGTTTACGACAACTCCTCCA
Seq C2 exon
CGCCGTACTGCAACAACCTGATGAAGGGTCTTGAGTCGAGTCCCATTTCCCGCATGATCTGGAGGGCCCTGAAACCGCTGCTCATGGGAAAGATCTTGTACACACCAGACACTCCGGCCACACAGAGGATCATACATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'10-10,'10-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.122 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGTCAAGTCAGACCCAA
R:
CATGTATGATCCTCTGTGTGGCC
Band lengths:
228-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]