BtaEX6035706 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96275750-96278356:-
Coord C1 exon
chr8:96278222-96278356
Coord A exon
chr8:96276449-96276552
Coord C2 exon
chr8:96275750-96275842
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTATTCTGTTCTGTTTACAGGAT
3' ss Score
11.84
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTTGGCGAGTGGGCGATTCGGAAACTGGGCCTTGTGAAGTATGGAGAAAAATATGCTGGGAACTACAGTGGAGGCAATAAGCGCAAGCTCTCAACAGCCATGGCTTTGATTGGTGGGCCTCCAGTGGTGTTTCTG
Seq A exon
GATGAACCAACCACAGGCATGGACCCTAAAGCCCGGCGCTTCCTGTGGAATTGTGCCCTAAGTATCATCAAGGAAGGGAGATCAGTAGTGCTTACCTCTCACAG
Seq C2 exon
TATGGAAGAATGTGAAGCTCTCTGCACTAGGATGGCCATTATGGTCAACGGGCGGTTCAGGTGTCTTGGCAGTGTTCAACATCTGAAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'55-59,'55-56,56-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(30.3=100)
A:
PF0000522=ABC_tran=PD(2.8=11.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCGAGTGGGCGATTC
R:
ATTTTTCAGATGTTGAACACTGCCA
Band lengths:
226-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]