MmuEX0002940 @ mm9
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53049134-53051163:-
Coord C1 exon
chr4:53051029-53051163
Coord A exon
chr4:53049745-53049848
Coord C2 exon
chr4:53049134-53049226
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTATTCTAATTATAGGAT
3' ss Score
8.18
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
Exon sequences
Seq C1 exon
GTTGGTGAATGGGCAATTCGCAAACTGGGCCTGGTAAAGTATGGAGAAAAATATGCCAGTAACTACAGTGGCGGCAACAAACGAAAGCTCTCCACAGCCATGGCTTTGATTGGCGGACCTCCTGTGGTGTTTCTG
Seq A exon
GATGAACCAACCACAGGCATGGACCCTAAAGCCCGGAGATTCTTGTGGAATTGTGCCCTAAGCATTGTCAAGGAGGGGAGATCTGTAGTCCTTACATCTCATAG
Seq C2 exon
TATGGAAGAATGTGAAGCTCTTTGTACAAGGATGGCCATAATGGTCAATGGAAGGTTCAGGTGCCTTGGCAGTGTCCAACATCTGAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'48-51,'48-50,49-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(17.2=54.3)
A:
PF0000522=ABC_tran=PD(2.8=11.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGAATGGGCAATTCG
R:
GTTTTTCAGATGTTGGACACTGCC
Band lengths:
226-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: