RnoEX6021858 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69863057-69864949:-
Coord C1 exon
chr5:69864815-69864949
Coord A exon
chr5:69863681-69863784
Coord C2 exon
chr5:69863057-69863149
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTATTCTAATTATAGGAT
3' ss Score
8.26
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
Exon sequences
Seq C1 exon
GTTGGTGAATGGGCAATTCGCAAACTGGGCCTTGTTAAGTATGGAGAAAAATACGCCAGCAACTACAGTGGCGGTAACAAGCGGAAGCTTTCCACAGCCATTGCTCTGATTGGCGGGCCTCCTGTGGTGTTTCTG
Seq A exon
GATGAACCAACCACAGGCATGGACCCCAAAGCCCGGAGATTCCTGTGGAATTGTGCCCTAAGCATTATCAAGGAGGGAAGATCCGTAGTTCTTACATCTCATAG
Seq C2 exon
CATGGAGGAATGTGAAGCTCTTTGTACCAGGATGGCCATAATGGTCAATGGGAGGTTCAGGTGCCTCGGCAGTGTCCAACATCTGAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'60-64,'60-61,62-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(30.3=100)
A:
PF0000522=ABC_tran=PD(2.8=11.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGAATGGGCAATTCG
R:
GTTTTTCAGATGTTGGACACTGCC
Band lengths:
226-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]