DreEX6033517 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51983599-51987207:+
Coord C1 exon
chr1:51983599-51983733
Coord A exon
chr1:51986721-51986824
Coord C2 exon
chr1:51987115-51987207
Length
104 bp
Sequences
Splice sites
3' ss Seq
GGCTGTTATTGTGGTTACAGGAC
3' ss Score
5.85
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCGCAGATTGGGGCATCCGCAAACTGGGCCTGATGAAGTATGTGGACAAAGCAGCAGGAAGCTACAGCGGAGGAAACATGAGGAAGCTTTCCACCGCCATGGCGCTCATTGGAGGACCGCCGGTGGTGTTCTTG
Seq A exon
GACGAACCCACCACTGGGATGGACCCCAAAGCACGGCGGGCCCTGTGGAACTGCATCCTCAGCATCATTAAAGAGGGACGCTCCGTCGTGCTGACCTCACACAG
Seq C2 exon
TATGGAGGAATGTGAAGCTCTTTGCACTCGGATGGCCATCATGGTGAACGGCAGGTTCCGCTGTCTGGGCAGTGTGCAGCATTTAAAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'48-50,'48-49,49-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(30.3=100)
A:
PF0000522=ABC_tran=PD(2.8=11.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCAGATTGGGGCATCC
R:
TGTTCTTTAAATGCTGCACACTGC
Band lengths:
227-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]