GgaEX6050619 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53603151-53604224:-
Coord C1 exon
chrZ:53604090-53604224
Coord A exon
chrZ:53603371-53603474
Coord C2 exon
chrZ:53603151-53603243
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTTTGCATGTATTTTGCAGGAT
3' ss Score
9.21
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GTTGGTGAATGGGCAATTCGTAAACTGGGCCTTGTGAAATATGGAGAAAAATATGCAGGCAACTACAGCGGAGGGAACAGGCGCAAGCTCTCCACAGCAATAGCCCTCATTGGAGGGCCACCTGTGGTATTCCTG
Seq A exon
GATGAGCCAACAACAGGGATGGACCCCAAAGCACGCCGTTTCTTGTGGAACTGTGCTCTGAGTGTTATCAAAGAGGGGAGATCAGTCGTGCTTACATCTCACAG
Seq C2 exon
CATGGAAGAGTGTGAAGCGCTGTGCACTCGAATGGCGATAATGGTGAATGGGCGTTTCAGGTGTCTGGGCAGCGTCCAGCACCTAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'59-75,'59-74,60-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(30.3=100)
A:
PF0000522=ABC_tran=PD(2.8=11.4)
C2:
PF137321=DUF4162=PU(8.3=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGAATGGGCAATTCGT
R:
TGTTCTTTAGGTGCTGGACGC
Band lengths:
227-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]