BtaEX6036176 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:105965498-105974410:-
Coord C1 exon
chr8:105974249-105974410
Coord A exon
chr8:105970249-105970412
Coord C2 exon
chr8:105965498-105966213
Length
164 bp
Sequences
Splice sites
3' ss Seq
CGGTACGCTCTCTCCCCCAGGTG
3' ss Score
11.26
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGCTGGACACTTTGAGCAAAATCACAGCCCAGGGGCAGTACGAGCTCCGGGTGGACCTGCGGGACCACGGGGAGTCGGCCCACGCCGTCTACGACAAGTTCAGCGTGGGAGATGCCCGGACGCGCTACCGGCTGAAGGTGGAGGGGTACAGTGGCACGGCAG
Seq A exon
GTGACTCCATGGCCTACCACAATGGCAGATCCTTCTCCACCTTCGACAAGGACACAGACTCGGCCATCACCAACTGTGCCCTGTCCTACAAGGGGGCTTTCTGGTACAAGAACTGCCACCGTGTCAACCTGATGGGGAGATACGGGGACAACAGCCACAGTCAG
Seq C2 exon
GGTGTTAACTGGTTCCACTGGAAGGGCCACGAGCATTCAATCCAGTTTGCTGAGATGAAGCTGAGACCCAGCAACTTCCGAAACCTCGAAGGCAGGCGCAAAAGGGCATAAGTTTCCGGGGACAACTGGGGGAGAGGAGAAAGGCCCAGAGATCGAAGATAATTTTACCAAAGCATCAATGTGAGCAGTCCGACCATTAAGCCACACCTGGGCGTCTGGCAGGAGCTAAAGTTGACCATGGATTGTCGGGGCCTGCGGCAGCTGGCCTCAGCCACTCCGCGATGACTTCCTTCACACCAAAGACCACAGTGTCCGGCAGGTTTCCATTCTGTTGTTTGATTCGGCAAAAAGTCTTGCAGCGACAGCATCACAGTGGTTTTCCTTCTCTTGGGTGGCTCTGGGGATGGGAGCGGGGTAGCCTGTACAGTGGTAGCTTGTCTTAGAACCAGCTGGATTTTACACAAAGCTGTATAATTAATTATCATTATTTTTGTTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575-'33-36,'33-34,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.194
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.7=100)
A:
PF0014713=Fibrinogen_C=FE(25.7=100)
C2:
PF0014713=Fibrinogen_C=PD(11.0=62.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGTGGAGGGGTACAGTG
R:
CCCAGGTGTGGCTTAATGGTC
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]