DreEX0080087 @ danRer10
Exon Skipping
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27960853-27964704:-
Coord C1 exon
chr5:27964543-27964704
Coord A exon
chr5:27962252-27962415
Coord C2 exon
chr5:27960853-27962152
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTCTTTTTTAAAGGTG
3' ss Score
10.76
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
GTCTATCTAACCTCCATAAAATCACCTCCTTTGGGCAGTATGAGCTGCGTGTGGACCTCAGAGATAAGGGCGAGTCTGCATACGCGCAATATGACAAGTTTTCAATCTCTGAACCACGTGCTCGCTACAAAGTCCATGTTGGAGGATACAGTGGCACAGCAG
Seq A exon
GTGATTCAATGACATATCATCACGGCCGTCCATTCTCAACTTACGATAATGACAATGATATAGCGGTCACCAACTGTGCTCTGTCATATAAGGGAGCTTTCTGGTATAAAAACTGTCATCGAGTAAATATAATGGGCAGATATGGAGACAACAGCCACAGCAAG
Seq C2 exon
GGTGTAAACTGGTTCCACTGGAAGGGTCACGAGCACTCTGTTGAGTTTGCAGAGATGAAGATCAGACCTGCCAACTTCAGGAACTTTGAGGGAAGAAAAAAGCGATCATAAACCACTATACTTCAGCTGGATTCAACCAACCCATTTGGCCCCAGTTCCTCCTGCATCATCTCATCCCCTTCATCTACCAAAGCCACTGCCAGGAGCCCGGCCTGCTCTCTACACTCGCCTGTTCATGGAGAACAAATTCAACAACAAAAGTTTTCACCCCACCTCCCATTCAAAGCTAAAGTCCTAACACGGTCGTGTATGTGTATACACTTCTGTCCACATCAATCTGACAGTAAACCAATAGACTCATAGTGAAGTGGTAAACATTACACACTGTGCCTGTTCATCATAAGCACACCAAAGACAGACCCTCCGATAACATAAAACACAATGCAGACAGAGAGGAGATTTTGAGTTTGGCTTGGTGCTTTCAAGTTTTAAAAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948-'29-35,'29-34,30-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.7=100)
A:
PF0014713=Fibrinogen_C=FE(25.7=100)
C2:
PF0014713=Fibrinogen_C=PD(11.0=62.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTCAGAGATAAGGGCG
R:
TGGGTTGGTTGAATCCAGCTG
Band lengths:
255-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]