RnoEX0092225 @ rn6
Exon Skipping
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79789671-79794514:-
Coord C1 exon
chr5:79794353-79794514
Coord A exon
chr5:79791778-79791941
Coord C2 exon
chr5:79789671-79790439
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTTTCTCAATCAGGTG
3' ss Score
10.91
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GACTGGATAACCTGAGCAAAATCACAGCCCAAGGGCAATATGAGCTCCGGGTGGACCTACAAGACCATGGGGAGTCAGCCTATGCTGTGTATGACAGGTTCAGTGTTGGAGATGCCAAGAGTCGCTACAAGCTGAAGGTAGAAGGATACAGTGGAACGGCAG
Seq A exon
GTGACTCCATGAACTATCACAATGGTAGATCCTTCTCTACCTATGACAAGGACACAGACTCAGCCATCACCAACTGTGCCCTGTCCTACAAAGGAGCTTTCTGGTATAAGAACTGTCATCGTGTCAACCTGATGGGCAGATATGGGGACAATAATCACAGTCAG
Seq C2 exon
GGTGTTAACTGGTTCCACTGGAAGGGCCATGAGTACTCAATCCAGTTTGCGGAGATGAAACTAAGACCCAGCAACTTCCGAAATCTGGAAGGCAGGCGTAAGCGGGCATAAATCCCAGGGACAATTTGGTGAGAGAGGAATGGGGCCCAGAGAAAACAGGATTTTTACCAAAGCATCAATACAACCAGTCCAACGGTGAAGCTATCCTTGGGCATTTGATGGGCATCCAAGCAGACCATGGATCACTGAGGCACTGACGTAGGCCCCTCTGCAATTACTTCCTTTGCACCAAAGACAACAGTCTGCAACTAGTTTCTGCTTTTTTGTTTGATTGAGCAAAGTCTCCTAGCGACAGCAACACCGTGATTTTTACTTCTACTGGGTGGTTCTGGGAATGGGAGAGGGGCGAGCTGGCTATCCAGCGGACATAGTCATTTTCAGAGCCAGCTATATTCTACACAAAGCTGTTCAATTGTTATTGGTTGGGTCGCAAAGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645-'39-54,'39-53,40-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.194
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.7=100)
A:
PF0014713=Fibrinogen_C=FE(25.7=100)
C2:
PF0014713=Fibrinogen_C=PD(11.0=62.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAAGAGTCGCTACAAGC
R:
CTTCACCGTTGGACTGGTTGT
Band lengths:
252-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]