GgaEX6014935 @ galGal3
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
NA
Coordinates
chr17:3036348-3038445:-
Coord C1 exon
chr17:3038284-3038445
Coord A exon
chr17:3037562-3037725
Coord C2 exon
chr17:3036348-3036898
Length
164 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTCCTTTCCATCCAGGTG
3' ss Score
11.63
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCTGGAGAACCTCCACAAAATCAGCTCTCAGGGGCAGTACGAGCTGCGTGTGGATCTGAGAGACAGAGGTGAGACAGCCTATGCTGTGTACGACAAGTTCAGCGTTGGAGATGCCAAGACCCGGTACCGGCTGAGGGTGGATGGCTACAGTGGCACAGCAG
Seq A exon
GTGACTCCATGACCTACCATAATGGAAGATCCTTCTCCACTTTTGACAAGGACAATGATTCTGCTATCACCAACTGTGCTTTGTCATACAAGGGTGCTTTCTGGTACAAGAATTGTCACCGAGTCAATCTGATGGGCAGATATGGTGACAACAACCACAGTCAG
Seq C2 exon
GGTGTTAATTGGTTCCACTGGAAGGGCCACGAATACTCCATCCAGTTTGCAGAGATGAAACTGAGACCCTCCAGCTTTCGGAATCTGGAAGGAAGACGAAAGCGAGCATAAAGCCTTGGGATGGTGAAAGGGCTACGGGCAGGGCAACATGGGGAGGGACAGAGAGCGGGGGGCATGGGAGGATCTCTGGCATCACTGGGGTGATGGGTGTGAGGAGCTGGTAGTCGTACCAAAGCATCGCAACCCTTGGCACAAGAGCCCAAACAACGAGCCTTACGTGTCCCAGCAATTCCAGCAGAGCAGCTCCAGCTCTGCCCACTGCTGATGTCCTTCACGCCAAAGACAACGATCTCAAGGGTTGTATGCTGTTTTCTTCATTTTTCTTTTCTCAGCCTCTGGGATGAAGTTCTTCCACGGTCTGACTATCTCTTGGGTGGCCCAGGGTAGGGGAGGGAGAACAGCTTTGTATATTGGTAGTTTGTTTTAGAACCAGCCATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'27-26,'27-25,28-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.7=100)
A:
PF0014713=Fibrinogen_C=FE(25.7=100)
C2:
PF0014713=Fibrinogen_C=PD(11.0=62.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCTCTCAGGGGCAGTAC
R:
TGCTCGCTTTCGTCTTCCTTC
Band lengths:
250-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]