MmuEX6093966 @ mm10
Exon Skipping
Gene
ENSMUSG00000028364 | Tnc
Description
tenascin C [Source:MGI Symbol;Acc:MGI:101922]
Coordinates
chr4:63959785-63964759:-
Coord C1 exon
chr4:63964598-63964759
Coord A exon
chr4:63961987-63962150
Coord C2 exon
chr4:63959785-63960543
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTTATTCTCAATAAGGTG
3' ss Score
6.52
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GACTGGATAACCTGAGCAAAATCACAGCCCAAGGGCAGTATGAGCTCCGGGTGGACCTACAAGACCATGGGGAGTCTGCCTATGCTGTGTACGACAGATTCAGTGTTGGAGATGCCAAGAGTCGCTACAAGCTGAAGGTAGAAGGATACAGTGGAACAGCAG
Seq A exon
GTGACTCCATGAACTATCACAATGGTAGATCCTTCTCCACCTATGACAAGGACACAGACTCAGCCATCACCAACTGTGCCCTGTCCTACAAAGGAGCTTTCTGGTATAAGAACTGTCATCGTGTCAACCTGATGGGCAGATATGGGGACAATAACCACAGTCAG
Seq C2 exon
GGCGTTAACTGGTTCCATTGGAAGGGCCATGAGTACTCAATCCAGTTTGCTGAGATGAAACTGAGACCCAGCAACTTCCGAAATCTGGAAGGCAGGCGTAAGCGGGCATAAATTCCAGGGATAATTTGGTGAGAGAGGAATGGGGCCCAGAGAAAAGAAAGGATTTTTACCAAAGCATCAACACAACCAGTCTAACAGTGAAGCTCTCCTTGGGCATTTGATGGGCGTCCAAGCAGACCACACGGATCACTGAGGCACTGATGTAGGCCCCTCTGCAACGACTTCCTTTGCACCAAAGACAACAGTCTACAAGTTTCTACTTTCTTGTTTGATTGAGCAAAGTCTCCTAGTGACAGCAACACCATGAATTTTACTTCTCTTGGGTGGTTCTGGGAATGGGAGAGGGGCAAGCTGGCCATACAGGGGACATGGTCATTCTCCGAGCCAGCTGTGTTTTACACAAAGCTGTACAATTGTTATTGGTTGAGGTCACAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028364-'43-52,'43-50,45-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.194
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.7=100)
A:
PF0014713=Fibrinogen_C=FE(25.7=100)
C2:
PF0014713=Fibrinogen_C=PD(11.0=62.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATGGGGAGTCTGCCTAT
R:
CTTTTCTCTGGGCCCCATTCC
Band lengths:
257-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types