BtaEX6036237 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016952 | PSMD5
Description
Bos taurus proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 (PSMD5), mRNA. [Source:RefSeq mRNA;Acc:NM_001075693]
Coordinates
chr8:112109327-112117754:-
Coord C1 exon
chr8:112117578-112117754
Coord A exon
chr8:112110458-112110602
Coord C2 exon
chr8:112109327-112109440
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATCTATGGTGTCTCCTTTAGGGA
3' ss Score
10.32
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CATCATGGCGGCCCAGGCGCTGGCGCTGCTGAGGGAGGTTTCGCGGCTGGAGGCGCCGCTGGAGGAGCTGCGCGCTCTGCAGTCGCTGCTGCAGTCGGTGCCGCTCAGCGAGCTCCGCGAACAAGCGGCGGAACTGCGCCTTGGTCCGCTCTTCTCCCTCCTCAACGAGAACCATCG
Seq A exon
GGAACAGACTACTTTGTGTGTATCCATTCTGGAGAGATTGCTGCAAGCTTTGGAGCCCGTTCATGTGGCCCGGAACCTCAGGGTTGACCTGCAGAGAGGACTGACTCACCCTAATGATTCTGTAAAAATCCTCACTCTGTCCCAG
Seq C2 exon
GTTGGAAGGATTGTTGAAAATTCTGATGCTGTTACTGAGATTCTAAATAATGCTGAATTACTGAAACAAATTGTTTATTGTATTGGTGGAGAGAATCTGTCAGTAGCTAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016952-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=PU(11.3=98.3)
A:
PF105084=Proteasom_PSMB=FE(9.5=100)
C2:
PF105084=Proteasom_PSMB=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGAGGGAGGTTTCGC
R:
ACTGACAGATTCTCTCCACCA
Band lengths:
256-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]