HsaEX0050624 @ hg19
Exon Skipping
Gene
ENSG00000095261 | PSMD5
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:HGNC Symbol;Acc:9563]
Coordinates
chr9:123594110-123605190:-
Coord C1 exon
chr9:123605015-123605190
Coord A exon
chr9:123595590-123595734
Coord C2 exon
chr9:123594110-123594223
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATTTATGATGTCTCCTTCAGGGA
3' ss Score
9.15
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAGATGGCAGCCCAGGCTTTGGCGCTGCTGAGAGAGGTAGCGAGGCTGGAAGCGCCGCTGGAGGAGCTACGCGCGCTTCACTCCGTGCTGCAGGCAGTGCCGCTCAACGAGCTTCGCCAGCAAGCGGCGGAGCTGCGCCTCGGCCCGCTCTTCTCCCTGCTTAACGAGAACCATAG
Seq A exon
GGAAAAGACTACTTTGTGTGTATCCATTCTGGAGAGATTGCTCCAAGCTATGGAACCGGTTCACGTGGCCCGGAACCTCAGGGTTGACCTGCAGAGGGGACTAATTCACCCTGATGATTCTGTAAAAATCCTCACTCTTTCCCAG
Seq C2 exon
ATTGGAAGAATTGTTGAAAATTCTGATGCTGTTACTGAGATTCTAAATAATGCTGAATTACTAAAACAAATTGTTTATTGCATTGGTGGAGAGAATCTATCTGTAGCAAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095261_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=PU(11.3=98.3)
A:
PF105084=Proteasom_PSMB=FE(9.5=100)
C2:
PF105084=Proteasom_PSMB=PD(19.4=87.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAGAGGTAGCGAGGCTG
R:
AGATTCTCTCCACCAATGCAA
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)