RnoEX0070701 @ rn6
Exon Skipping
Gene
ENSRNOG00000018809 | Psmd5
Description
proteasome 26S subunit, non-ATPase 5 [Source:RGD Symbol;Acc:1308434]
Coordinates
chr3:13928620-13933658:-
Coord C1 exon
chr3:13933288-13933658
Coord A exon
chr3:13929669-13929813
Coord C2 exon
chr3:13928620-13928733
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGCTGTCTCCTTTAGGGA
3' ss Score
12.02
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATCAGTTATCCCGGCCGCCGCAAGCCTGGCAACTGCAAGACCTCGGTCCTCAAAGCAAAGGGGCGGTGACCGCTCTGAGCAAGGATCTCGCGAGACTTTGGCAGATCTGTTGGGAGGCTACGCTCTCTCAGATCTCGCGAGACTCCGGGACGCGCTCTAGGAACCTGGAAGGTGGGCGGGCAGACCGGAGCCAGCAAGATGGCGGCGCAGGCTGTATCACTCCTGCGGGAGGTGGCGCGGCTGGAGGCGCCGCTGGAGGAGCTGCGTGCGCTGCAGTCCGTGGTGCAGGCTGTGCCGCTCCACGAGCTTCGCGAGCAGGCGGCGGAGCTACGCCTTCGCCCGCTGTTCTCCTTGCTTAACCAGAACAATCG
Seq A exon
GGAACAGACTGCTCTGTGTGTATCCATTCTGGAGAGGTTGCTCCAGGCAGTGGAACCAATTCATTTGGCCAGGAACCTCAGGCTTGACCTGCAGAGGGGACTGACTCACCCTGATGACTCTGTAAAAACCCTCACCCTCTCCCAG
Seq C2 exon
ATTGGGAGGATTGTTGAGGATTCGGAAGCTGTTACTGAGGTCCTGAGTAATGCTGAACTCCTGAGGCAGGTTGTCTGCTGCATTGGTGGAGAGAATTTATCTGTGGCTAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018809_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=PU(11.3=98.3)
A:
PF105084=Proteasom_PSMB=FE(14.1=100)
C2:
PF105084=Proteasom_PSMB=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGTATCACTCCTGCG
R:
CTCCACCAATGCAGCAGACAA
Band lengths:
255-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]