DreEX0058999 @ danRer10
Exon Skipping
Gene
ENSDARG00000059046 | psmd5
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:ZFIN;Acc:ZDB-GENE-050417-28]
Coordinates
chr21:5212131-5228560:-
Coord C1 exon
chr21:5228350-5228560
Coord A exon
chr21:5224769-5224913
Coord C2 exon
chr21:5212131-5212244
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTGTTGGGTGCAGAGA
3' ss Score
7.11
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CCCGCCCCTCGGTCACGTGACGCAAACATTGAGCCATGATGGCGGCGCCTATAGAGAGTCTGTTGAATGAGATCTGTGAATCAGAAGATCCGATCGAGGAGCTCAAGAGCCTCCGGACAGCCGTTTTAGCGACTCCCGTGAGCGGTTTGAGGCCAGCAGTGTCTGGAGCCCGACTGGAGATCATATTCAGCCTTTTAAACACTAATGACAA
Seq A exon
AGAGCAGATTGAGGTGTGTGTGGAGATCCTAAGTCGAGTCCTGCAGGCTTTAGAACCGGTTCAGCTTGCACAGAACTACAGGAAAGCGCTCCAGAGCGGACTCAACCATCCTGATGACTCGGTCAAAGTGCTCACGCTCACACAG
Seq C2 exon
ATTGGCCGTGTGGCTGGACATGCTGAGGGAGTGACGCAGATGCTGAACAATGTAGAAATCCTGCATGACGTGATTCAGTGCATCAGTGTTGAACGCATCGCTGTGGCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059046-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=PU(22.2=98.3),PF147691=CLAMP=PU(14.3=17.2)
A:
PF105084=Proteasom_PSMB=FE(18.7=100),PF147691=CLAMP=FE(68.6=100)
C2:
PF105084=Proteasom_PSMB=FE(14.4=100),PF147691=CLAMP=PD(14.3=26.3),PF060257=DUF913=PU(18.5=76.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGCCTATAGAGAGTCTGT
R:
TGCACTGAATCACGTCATGCA
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]