MmuEX0037561 @ mm10
Exon Skipping
Gene
ENSMUSG00000026869 | Psmd5
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:MGI Symbol;Acc:MGI:1914248]
Coordinates
chr2:34865982-34870962:-
Coord C1 exon
chr2:34870750-34870962
Coord A exon
chr2:34866893-34867037
Coord C2 exon
chr2:34865982-34866095
Length
145 bp
Sequences
Splice sites
3' ss Seq
ACCTGTGCTGTCTCCTTTAGGGA
3' ss Score
12.63
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGGAACCTAGTAGGTGGGCGGGCAGACGGGAGCCAGGGAGATGGCGGCGCAGGCTGTGTCGCTCCTGCGGGAGGTGGCGCGGCTGGAGGCGCCGCTGGAGGAGCTTCGTGCGCTGCAGTCAGTGGTGCAGGCTGTGCCGCTGCACGAGCTTCGCGAGCAGGCGGCGGAGCTACGCCTCCGCCCGCTGTTCTCCTTGCTTAACCAGAACAATCG
Seq A exon
GGAACAGACTGCTTTGTGTGTCTCCATTCTGGAGAGGCTGCTCCAAGCTGTGGAGCCGATTCACTTGGCCAGGAACCTCAGGCTTGACCTGCAGAGGGGACTGACTCACCCTGATGACTCTGTAAAAACCCTCACTCTGTCGCAG
Seq C2 exon
ATTGGAAGAATTGTTGAAAATTCAGAAGCTGTTACTGAGATTCTCAATAATGCTGAGCTGTTGAAACAGATTGTTTATTGCATTGGCGGAGAGAATTTATCTGTTGCTAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026869-'4-7,'4-4,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=PU(11.3=98.3)
A:
PF105084=Proteasom_PSMB=FE(9.5=100)
C2:
PF105084=Proteasom_PSMB=FE(7.3=100)
Main Skipping Isoform:
ENSMUST00000028225fB15306
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGTGTCGCTCCTG
R:
TCTCTCCGCCAATGCAATAAACA
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types