GgaEX6015498 @ galGal3
Exon Skipping
Gene
ENSGALG00000001637 | PSMD5
Description
NA
Coordinates
chr17:8976255-8977372:-
Coord C1 exon
chr17:8977178-8977372
Coord A exon
chr17:8976890-8977034
Coord C2 exon
chr17:8976255-8976368
Length
145 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTCTGTCCGCACAGGGA
3' ss Score
9.4
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GGGGCTTGGCGGCGGCGCCAAGATGGCGGAGGCGGTGGTGGAGCTCCTGGAGCGTGCGGCGCGACGGGAGGCGCCGCTGGAAGAGCTGCGCGCCCTGCGGCTCGCTGTGCAGGCCGTGCCGCCCGCCGCCCTGCGCGCCCGCCTCAGCGACGAGCACCTGGCAGCGCTCTTCACCCTCCTCAGCTCCAGTGAGCG
Seq A exon
GGAGCAGCTGTCCGCCTGCGTTGCCGTCCTGGAGAGGCTCCTTCAGGCCCTGGACCCGCTCTACGTGATCCAGAACCTCCGGGAGGAGCTGCGGAAGGGGCTTTTCCACCCGGACGACTCCGTGAAGATCCTCTCCATATCCCAG
Seq C2 exon
GTTGGGAGGATTGTTGAAAATTCAGATGCTGTTAGAGAAATTCTCAACAGTCCTGAAGTACTACGGCAGATCATAAATTGCATTGGTGGTGAGAAAATAGCAGTGGCTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001637-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=PU(11.3=98.3)
A:
PF105084=Proteasom_PSMB=FE(9.5=100)
C2:
PF105084=Proteasom_PSMB=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGGAGCTCCTGGAG
R:
CCAATGCAATTTATGATCTGCCGT
Band lengths:
248-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]