BtaEX6036255 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003012 | TRAF1
Description
TNF receptor-associated factor 1 [Source:HGNC Symbol;Acc:HGNC:12031]
Coordinates
chr8:112203258-112214586:-
Coord C1 exon
chr8:112214438-112214586
Coord A exon
chr8:112212176-112212260
Coord C2 exon
chr8:112203258-112203323
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATTCGTTCTCGTGTTCCCAGGAA
3' ss Score
9.45
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GACCCCGGGATGGCCTCTGGCTCAGCCAGCAGCCCCCGCCCGGCCCCCGATGAGAACGAGTTCCCCTTTGGGTGCCCCCCCACTGCCTGCCAGGACCCCCCAGAGCCCGGCCCTGTCTGCTGCGCCGTCTGTCTCTCTGAGAAAGTGAG
Seq A exon
GAATGACGAGGATCGGATCTGTCCCAAATGCAAAGGGGATGACACCCCATCTGAAAGTCCAGGAAGCCTTCTGTCTCAGGAGAAG
Seq C2 exon
GATCACCCCGAGGTGGCTGAGGCTGGAGTTGGGTGCCCCTTTGCAGGTGTCGGCTGCTCCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003012-'5-5,'5-1,7-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=0.690 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATGAGAACGAGTTCCCCT
R:
CTTGAAGGAGCAGCCGACAC
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]