MmuEX0048684 @ mm10
Exon Skipping
Gene
ENSMUSG00000026875 | Traf1
Description
TNF receptor-associated factor 1 [Source:MGI Symbol;Acc:MGI:101836]
Coordinates
chr2:34949039-34958106:-
Coord C1 exon
chr2:34957959-34958106
Coord A exon
chr2:34956196-34956280
Coord C2 exon
chr2:34949039-34949104
Length
85 bp
Sequences
Splice sites
3' ss Seq
ACTTATTCGTGTTTCCCCAGAGA
3' ss Score
8.82
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACCTTCTGGCCACCTGAAACCCCAAGATGGCCTCCAGCTCAGCCCCTGATGAAAACGAGTTTCAATTTGGTTGCCCCCCTGCTCCCTGCCAGGACCCATCGGAGCCCAGAGTTCTCTGCTGCACAGCCTGTCTCTCTGAGAACCTGAG
Seq A exon
AGATGATGAGGATCGGATCTGTCCTAAATGCAGAGCAGACAACCTCCATCCTGTGAGCCCAGGAAGCCCTCTGACTCAGGAGAAG
Seq C2 exon
GTTCACTCTGATGTAGCTGAGGCTGAAATCATGTGCCCCTTTGCAGGTGTTGGCTGTTCCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026875_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.169 A=0.351 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAACCCCAAGATGGCCTC
R:
GGGCACATGATTTCAGCCTCA
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types