DreEX6048585 @ danRer10
Exon Skipping
Gene
ENSDARG00000069482 | traf1
Description
TNF receptor-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-071120-4]
Coordinates
chr8:12393424-12394980:-
Coord C1 exon
chr8:12394392-12394980
Coord A exon
chr8:12394067-12394151
Coord C2 exon
chr8:12393424-12393522
Length
85 bp
Sequences
Splice sites
3' ss Seq
TAATAATGCTTTTATTTCAGAAA
3' ss Score
6.61
5' ss Seq
CAAGTAAAC
5' ss Score
1.87
Exon sequences
Seq C1 exon
GATTTCAAGACACAGCCACACTGTGTGTAAGCGCGTTTCTTCTACTTTCACTTATAACTCCACAAACTATCTTTCTATTTTTATTATTTTAAGCTTTTTTCAAAATATTATCAGCAAGATTAGACACAGCGTGGTTGATAAACACGCGGAAAAAGCGCAGTTTCCGGGTGTTTAAGGGGGAAACCCGTGGTGTTTTTCGACCGTGGGTATATCACCAAAAAGTCAAAAGCATATCAACATGTCATCATAACGTGCTGCTGGTACAGACTCTTCATCTTAACCCCTATAATGGCTTCTGGTTCAGCTTCAGACCCGTCGTTAAACGGTGTTTCGTCCACACCGGATGAGAACGAGTATCCGTCAGGTTTCCCTCAGAGCATCTGCGATGAGGTGCCGAAAGATAAATACTTGTGTAGCAACTGCAATAATGTTTTGAATAAAGCGCGTCAAACGGTGTGCGGTCACCGATACTGCCTCGCCTGCGTCAACTGGCTGGTCAG
Seq A exon
AAACAACAAGGACCTAGTGTGCACAAAATGTAAAGGAGAGGATTCCAATGTTGAGAGTGACACTAGCGTACTGACTCCTAACCAA
Seq C2 exon
TTCTTCAATGATGTGGCTATCAATAAGGAAATTTTGGATCTGAAAGTTCACTGTGCTAACCAAGGCTGCCCCTGGAGAAGCACCCTAAAAAATTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069482-'2-1,'2-0,4-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=PU(72.5=40.8)
A:
PF152271=zf-C3HC4_4=PD(25.0=34.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGAGGTGCCGAAAGATA
R:
AGCACAGTGAACTTTCAGATCCA
Band lengths:
175-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]