HsaEX6062795 @ hg19
Exon Skipping
Gene
ENSG00000056558 | TRAF1
Description
TNF receptor-associated factor 1 [Source:HGNC Symbol;Acc:12031]
Coordinates
chr9:123676513-123688579:-
Coord C1 exon
chr9:123688214-123688579
Coord A exon
chr9:123685983-123686070
Coord C2 exon
chr9:123676513-123676578
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCCATGTTTCCCCAGGAA
3' ss Score
11.19
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
CCTTCAGTCACCATCCAGGGGATTTTTATCGCCACAAAGGGTAATTCCTGCTCCATCCCTGCTGTGACTCAGCTGTGACGTTGAACCACACAAGCCAGAGAGAAGAAGATAAAGTCATCAGAGCTCCTACTCACCAGAGAGTGAGGCCCAGGCCAGGACTCCACAAGGCTGGTCCCCTGCCCTGGAGCAACTTAAACAGGCCCTCTGGCCAGCCTGGAACCCTGAGATGGCCTCCAGCTCAGGCAGCAGTCCTCGCCCGGCCCCTGATGAGAATGAGTTTCCCTTTGGGTGCCCTCCCACCGTCTGCCAGGACCCAAAGGAGCCCAGGGCTCTCTGCTGTGCAGGCTGTCTCTCTGAGAACCCGAG
Seq A exon
GAATGGCGAGGATCAGATCTGCCCCAAATGCAGAGGGGAAGACCTCCAGTCTATAAGCCCAGGAAGCCGTCTTCGAACTCAGGAGAAG
Seq C2 exon
GCTCACCCCGAGGTGGCTGAGGCTGGAATTGGGTGCCCCTTTGCAGGTGTCGGCTGCTCCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056558-'2-4,'2-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=0.467 C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCCCTGATGAGAATGAGT
R:
CTTGAAGGAGCAGCCGACAC
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)