GgaEX6015507 @ galGal3
Exon Skipping
Gene
ENSGALG00000001583 | TRAF1
Description
NA
Coordinates
chr17:9007423-9009898:-
Coord C1 exon
chr17:9009787-9009898
Coord A exon
chr17:9009172-9009256
Coord C2 exon
chr17:9007423-9007521
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTTCTTTTTCCCAGGAA
3' ss Score
11.11
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATGTGCCCGAGCAGAAGTACCTGTGCAGCAACTGCAATAACGTCCTGAAGAAAGCCCTGCAAACGCTGTGTGGGCACAGATACTGCTCTGCCTGCCTGTCCTGGATTGTCCG
Seq A exon
GAACAATAAAAATCCAGTTTGCCAGAAATGTAAAGAGGAGGATCCCAGCACTCTGAGTGAAGGAAGCCTATTGGCAGAGGAAAGG
Seq C2 exon
GCCTTTGGGGATGCTGCCATTAACAAAGAGATTTCTGAGCTCAGAGTGCACTGCGTGACCCTTGGGTGCAGTTGGTGTGGTACCATGAAAAATTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001583-'1-3,'1-1,2-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=PU(72.5=76.3)
A:
PF0009720=zf-C3HC4=PD(25.0=34.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGTACCTGTGCAGCAA
R:
CACACCAACTGCACCCAAGG
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]