BtaEX6036273 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112286878-112295073:-
Coord C1 exon
chr8:112295000-112295073
Coord A exon
chr8:112293932-112294071
Coord C2 exon
chr8:112286878-112287105
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTACTTGGGCTGAAGGTA
3' ss Score
2.86
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAACCAATTGCAGTTTGTGCTACCTGATTCTCTAACTACCTGGGAAATTCAAGGTGTTGGAATTTCAAATAGCG
Seq A exon
GTATATGTGTTGCTGATACTCTGAAAGCAAAAGTGTTCAAAAGCGTCTTCCTGGAAATGAATATACCATATTCTGTGGTACGAGGGGAACAGGTCCAACTGAGTGGGACTGTTTACAACTACAGAACATCTGGAATTCAG
Seq C2 exon
TTCTGTGTTAAAATGCATCCTGTGGAGGGGATCTGTTCATCAGGAACCCCAGTCACTGACTCTCAGGGGAGAAGATTCTCCAAGTGTGTGCTCCAGAAAATCGAGGGTTCCTCCAACCACTTGGTCACCTTCACTGTGCTTCCTCTGGAAGTCGGCCTCCACAACCTCAGCTTCTCACTGGAGACTTCGGTTGGAAATGAAATCTTAGTAAAAACACTACGAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210-'22-24,'22-22,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(28.4=100)
A:
PF0020717=A2M=FE(52.3=100)
C2:
PF0020717=A2M=PD(4.5=5.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGATTCTCTAACTACCTGGGA
R:
TCCAACCGAAGTCTCCAGTGA
Band lengths:
248-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]