GgaEX0001798 @ galGal3
Exon Skipping
Gene
ENSGALG00000001565 | C5
Description
NA
Coordinates
chr17:9033170-9034672:-
Coord C1 exon
chr17:9034596-9034672
Coord A exon
chr17:9033794-9033933
Coord C2 exon
chr17:9033170-9033391
Length
140 bp
Sequences
Splice sites
3' ss Seq
TATGTGTTTAATTTTGTTAGGTA
3' ss Score
6.57
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTCAAAGACTTTGTCTATCACTCTGCCTGATTCACTGACTACCTGGGAAGTGCAAGGTGTTGGCATTTCTGATAAAG
Seq A exon
GTATATGTGTTGCTGCACCACTGGAAGTGCAAGTTGTAAAAGACATCTTCCTTAGCATTTATGTTCCTTATTCTGTGGTGCGAGGAGAACAAATTGAATTAAAAGGATCCGTTTATAACCATAGAGCGTCTGCAATTAAG
Seq C2 exon
TTCTGTGTTAAAATAGCAGCTGGAGATGGAATCTGTTCTTCTGGAGATTCTGCAACTACTAGACAAAGGATGCACAATTGTAATTTGAAGAATCTAGGTGCTGGTTCTTCATCGCCAATTGTGTTCAGGATTCTTCCTTTGGAATTAGGTCTTCACACTATCAACTTCACACTGCTGACAACTGGGAGCAGTGAAACTGTTGTTAAAACATTACGTGTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(29.2=100)
A:
PF0020717=A2M=FE(51.7=100)
C2:
PF0020717=A2M=PD(4.5=5.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCTGCCTGATTCACTGAC
R:
CTCCCAGTTGTCAGCAGTGTG
Band lengths:
248-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]