RnoEX6016563 @ rn6
Exon Skipping
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14090150-14094552:-
Coord C1 exon
chr3:14094479-14094552
Coord A exon
chr3:14093738-14093877
Coord C2 exon
chr3:14090150-14090377
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCCTCTGGGCTGAAGGTA
3' ss Score
4.27
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AAACCAGCTGCAGGTTGCACTGCCTGACTCACTGACGACCTGGGAAATTCAAGGCATCGGCATCTCAGACAATG
Seq A exon
GTATATGTGTTGCTGACACACTCAAGGCAAAGGTGTTCAAAGATGTCTTCCTGGAGATGAACATACCATATTCTGTTGTACGAGGGGAGCAGATCCAATTGAAGGGAACCGTTTACAATTATAGGACCTCTGGGACAATG
Seq C2 exon
TTCTGTGTTAAAATGTCTGCCGTGGAGGGAATCTGCACTCCAGGAAGCTCGGCTGCTAGCCCTCAGACCTCTAGGTCCTCCAGATGTGTGCGCCAGAGAATAGAGGGCTCCTCCAGTCACTTGGTGACCTTCAGCCTGCTTCCTCTGGAAATTGGCCTTCACTCCATAAACTTCTCACTAGAGACTTCATTTGGGAAAGAAATCTTAGTGAAGACATTACGGGTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899-'28-34,'28-32,29-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.092
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(28.4=100)
A:
PF0020717=A2M=FE(52.3=100)
C2:
PF0020717=A2M=PD(4.5=5.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCGGCATCTCAGACAAT
R:
CACTACCCGTAATGTCTTCACT
Band lengths:
250-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]