DreEX0017776 @ danRer10
Exon Skipping
Gene
ENSDARG00000021004 | c5
Description
complement component 5 [Source:ZFIN;Acc:ZDB-GENE-120510-2]
Coordinates
chr5:62784272-62793090:-
Coord C1 exon
chr5:62793008-62793090
Coord A exon
chr5:62788439-62788575
Coord C2 exon
chr5:62784272-62784493
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCACCTGTTTTTTTGGTCAGGGA
3' ss Score
6.99
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATCTGGTTCTGTGAGCATTAGTAAAACTCTTCCGGATTCAATCACCACATGGGAACTAAAAGCAGTTGGGGTATTCAATGAAG
Seq A exon
GGATCTGTGTGTCGGATAAAAGGATTCCGGTGTCCCAGGACATTTGGGTGGACGTCCCGTTGCCTTATTCTATGGTTCGTGGAGAGCAGATTCTGCTCAAGGGTTCAGTCTACAATCAGCGCTCTTCAGGCATTAAG
Seq C2 exon
TTCACTGTGACCCTGACAGCATCCAGTGCAGTGTGTGTGTTTCATGGAGCTCAGCAGGGGAAACCTGATAAGACAAATGAAAACAGTGGGCAGGTGGCAGGTGGTTCAGTGGCTATGGTCTCATTCTACATCATGGCTTTGGAAGCGGGCACTCATACGCTCACATTCACTTTAACAACCGACTGGATCACTGAGAGTGTGGTCAAGAAACTGAGAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021004-'22-26,'22-25,23-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.149
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(31.8=100)
A:
PF0020717=A2M=FE(51.1=100)
C2:
PF0020717=A2M=PD(4.5=5.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATTCAATCACCACATGGGA
R:
ACTCTCAGTGATCCAGTCGGT
Band lengths:
249-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]