HsaEX6062813 @ hg19
Exon Skipping
Gene
ENSG00000106804 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:1331]
Coordinates
chr9:123759825-123769255:-
Coord C1 exon
chr9:123769182-123769255
Coord A exon
chr9:123768197-123768336
Coord C2 exon
chr9:123759825-123760052
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCTTCCACTTTGGGCTGAAGGTA
3' ss Score
2.39
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AAAACAGTTGCAGTTTGCCCTACCTGATTCTCTAACCACCTGGGAAATTCAAGGCGTTGGCATTTCAAACACTG
Seq A exon
GTATATGTGTTGCTGATACTGTCAAGGCAAAGGTGTTCAAAGATGTCTTCCTGGAAATGAATATACCATATTCTGTTGTACGAGGAGAACAGATCCAATTGAAAGGAACTGTTTACAACTATAGGACTTCTGGGATGCAG
Seq C2 exon
TTCTGTGTTAAAATGTCTGCTGTGGAGGGAATCTGCACTTCGGAAAGCCCAGTCATTGATCATCAGGGCACAAAGTCCTCCAAATGTGTGCGCCAGAAAGTAGAGGGCTCCTCCAGTCACTTGGTGACATTCACTGTGCTTCCTCTGGAAATTGGCCTTCACAACATCAATTTTTCACTGGAGACTTGGTTTGGAAAAGAAATCTTAGTAAAAACATTACGAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804-'23-27,'23-25,24-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(28.4=100)
A:
PF0020717=A2M=FE(52.3=100)
C2:
PF0020717=A2M=PD(4.5=5.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATTCTCTAACCACCTGGGA
R:
TCCAAACCAAGTCTCCAGTGA
Band lengths:
247-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)