MmuEX6100776 @ mm9
Exon Skipping
Gene
ENSMUSG00000026874 | Hc
Description
hemolytic complement [Source:MGI Symbol;Acc:MGI:96031]
Coordinates
chr2:34874985-34880478:-
Coord C1 exon
chr2:34880405-34880478
Coord A exon
chr2:34879640-34879779
Coord C2 exon
chr2:34874985-34875212
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCTTTCCCTTTGGGCTGAAGGTA
3' ss Score
4.05
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAAACAGCTGCAGGTCACGCTGCCTGACTCACTAACGACTTGGGAAATTCAAGGCATTGGCATTTCAGACAATG
Seq A exon
GTATATGTGTTGCTGATACACTCAAGGCAAAGGTGTTCAAAGAAGTCTTCCTGGAGATGAACATACCATATTCTGTTGTGCGAGGAGAACAGATCCAATTGAAAGGAACTGTTTACAACTATATGACCTCAGGGACAAAG
Seq C2 exon
TTCTGTGTTAAAATGTCTGCTGTGGAGGGGATCTGCACTTCAGGAAGCTCAGCTGCTAGCCTTCACACCTCCAGGCCCTCCAGATGTGTGTTCCAGAGGATAGAGGGCTCGTCCAGTCACTTGGTGACCTTCACCCTGCTTCCTCTGGAAATTGGCCTTCACTCCATAAACTTCTCACTAGAGACCTCATTTGGGAAAGACATCTTAGTAAAGACATTACGGGTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026874-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(28.4=100)
A:
PF0020717=A2M=FE(52.3=100)
C2:
PF0020717=A2M=PD(4.5=5.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCTGACTCACTAACGAC
R:
TGTCTTTCCCAAATGAGGTCTCT
Band lengths:
258-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: