BtaEX6036687 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001764 | NCAN
Description
Bos taurus neurocan (NCAN), mRNA. [Source:RefSeq mRNA;Acc:NM_001193082]
Coordinates
chr7:3949687-3956615:-
Coord C1 exon
chr7:3956533-3956615
Coord A exon
chr7:3950679-3950823
Coord C2 exon
chr7:3949687-3949869
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCTGCTCCCCATTCTTACAGCAA
3' ss Score
9.63
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTTTTGGGCGTGAAAACACATGGATCGGCTTGAACGACAGGATCGTGGAAAGGGATTTCCAGTGGACGGACAACACAGGGCTG
Seq A exon
CAATTTGAGAACTGGCGGGAAAATCAGCCGGACAACTTCTTCGCGGGCGGGGAGGACTGTGTGGTGATGGTTGCACATGAGAGCGGGCGCTGGAACGACGTTCCCTGCAACTACAACCTCCCCTACGTCTGTAAGAAGGGCACAG
Seq C2 exon
TGCTGTGTGGTCCCCCTCCAGCGGTGGAGAATGCCTCGCCCATTGGTGCCCGCAAGGCCAAGTATAATGTCCATGCCACAGTACGCTACCAGTGTGATGAAGGATTTGCCCAGCACCATGTGGCCATCATCCGGTGCCGGAGCAATGGCAAATGGGACCGGCCCCAGATCATCTGCACCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001764-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.290
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATCGGCTTGAACGACA
R:
TTTGGTGCAGATGATCTGGGG
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]