HsaEX6094097 @ hg19
Exon Skipping
Gene
ENSG00000130287 | NCAN
Description
neurocan [Source:HGNC Symbol;Acc:2465]
Coordinates
chr19:19351412-19359691:+
Coord C1 exon
chr19:19351412-19351494
Coord A exon
chr19:19356122-19356266
Coord C2 exon
chr19:19359509-19359691
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCCCTATTCCTGCAGCAA
3' ss Score
9.89
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GCTTTGGGCATGAAAACACGTGGATCGGCCTGAACGACAGGATCGTGGAGAGAGATTTCCAGTGGACGGACAACACCGGGCTG
Seq A exon
CAATTTGAGAACTGGCGAGAGAACCAGCCGGACAATTTCTTCGCGGGTGGCGAGGACTGTGTGGTGATGGTGGCGCATGAAAGCGGGCGCTGGAACGATGTCCCCTGCAACTACAACCTACCCTATGTCTGCAAGAAGGGCACAG
Seq C2 exon
TGCTCTGTGGTCCCCCTCCGGCAGTGGAGAATGCCTCACTCATCGGTGCCCGCAAGGCCAAGTACAATGTCCATGCCACTGTAAGGTACCAGTGCAATGAAGGATTTGCCCAGCACCATGTGGCCACCATTCGATGCCGGAGCAATGGCAAGTGGGACAGGCCCCAAATTGTCTGCACCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130287-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100),PF0253517=Zip=FE(17.2=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8),PF0253517=Zip=PU(26.1=73.5)
C2:
PF0008415=Sushi=WD(100=91.9),PF0253517=Zip=FE(44.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGCATGAAAACACGTGGA
R:
CAGACAATTTGGGGCCTGTCC
Band lengths:
255-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)