HsaEX6094097 @ hg38
Exon Skipping
Gene
ENSG00000130287 | NCAN
Description
neurocan [Source:HGNC Symbol;Acc:HGNC:2465]
Coordinates
chr19:19240603-19248882:+
Coord C1 exon
chr19:19240603-19240685
Coord A exon
chr19:19245313-19245457
Coord C2 exon
chr19:19248700-19248882
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCCCTATTCCTGCAGCAA
3' ss Score
9.89
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GCTTTGGGCATGAAAACACGTGGATCGGCCTGAACGACAGGATCGTGGAGAGAGATTTCCAGTGGACGGACAACACCGGGCTG
Seq A exon
CAATTTGAGAACTGGCGAGAGAACCAGCCGGACAATTTCTTCGCGGGTGGCGAGGACTGTGTGGTGATGGTGGCGCATGAAAGCGGGCGCTGGAACGATGTCCCCTGCAACTACAACCTACCCTATGTCTGCAAGAAGGGCACAG
Seq C2 exon
TGCTCTGTGGTCCCCCTCCGGCAGTGGAGAATGCCTCACTCATCGGTGCCCGCAAGGCCAAGTACAATGTCCATGCCACTGTAAGGTACCAGTGCAATGAAGGATTTGCCCAGCACCATGTGGCCACCATTCGATGCCGGAGCAATGGCAAGTGGGACAGGCCCCAAATTGTCTGCACCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130287_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
PF0253517=Zip=FE(17.2=100),PF0005916=Lectin_C=FE(25.5=100)
A:
PF0253517=Zip=FE(30.6=100),PF0005916=Lectin_C=PD(43.4=93.9)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
ENST00000252575fB20818
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGCATGAAAACACGTGGA
R:
CAGACAATTTGGGGCCTGTCC
Band lengths:
255-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains