MmuEX6036062 @ mm9
Exon Skipping
Gene
ENSMUSG00000002341 | Ncan
Description
neurocan [Source:MGI Symbol;Acc:MGI:104694]
Coordinates
chr8:72621348-72624214:-
Coord C1 exon
chr8:72624132-72624214
Coord A exon
chr8:72621949-72622093
Coord C2 exon
chr8:72621348-72621530
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTCCAAAGCAA
3' ss Score
10.37
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTTTTGGACATGAGAATTCGTGGATCGGCCTGAATGACCGGACAGTAGAGAGGGACTTCCAGTGGACAGACAACACAGGACTG
Seq A exon
CAATATGAGAACTGGAGGGAGAAGCAGCCGGATAATTTCTTCGCAGGTGGGGAGGATTGTGTGGTGATGGTGGCACATGAGAGTGGGCGCTGGAATGATGTCCCCTGCAACTACAACCTACCCTATGTCTGCAAGAAGGGTACAG
Seq C2 exon
TGCTGTGTGGTCCCCCTCCAGCAGTGGAGAATGCCTCTCTTGTTGGTGTGCGCAAGATCAAGTACAATGTCCATGCCACTGTGCGATACCAGTGTGATGAAGGATTCTCCCAGCACCGAGTGGCCACTATCCGCTGCCGTAACAATGGGAAGTGGGACCGGCCTCAGATCATGTGCATCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002341-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATTCGTGGATCGGCCTG
R:
GATGCACATGATCTGAGGCCG
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: