RnoEX6055325 @ rn6
Exon Skipping
Gene
ENSRNOG00000048036 | Ncan
Description
neurocan [Source:RGD Symbol;Acc:619941]
Coordinates
chr16:21070972-21074232:+
Coord C1 exon
chr16:21070972-21071054
Coord A exon
chr16:21073367-21073511
Coord C2 exon
chr16:21074050-21074232
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCGCCCCCCAAAGCAA
3' ss Score
6.24
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTTTTGGACACGAGAATTCATGGATTGGCCTGAATGACAGGACAGTAGAGAGGGACTTCCAGTGGACAGACAACACAGGACTG
Seq A exon
CAATATGAGAACTGGAGAGAGAAGCAGCCGGATAATTTCTTCGCAGGTGGGGAGGATTGTGTGGTGATGGTGGCGCATGAGAATGGACGCTGGAATGATGTCCCCTGTAACTACAACCTCCCCTACGTCTGCAAGAAGGGTACAG
Seq C2 exon
TGCTGTGTGGGCCCCCTCCAGCAGTGGAGAATGCCTCTCTTGTTGGTGTGCGCAAGGTCAAGTACAATGTCCATGCCACTGTGCGATACCAGTGTGATGAAGGATTCTCCCAGCACCATGTGGCTACCATCCGATGCCGAAACAATGGGAAGTGGGACCGGCCTCAGATTGTGTGCACCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048036-'19-24,'19-21,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.129
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAATTCATGGATTGGCCT
R:
TTGGTGCACACAATCTGAGGC
Band lengths:
255-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]