DreEX6098686 @ danRer10
Exon Skipping
Gene
ENSDARG00000005783 | ncanb
Description
neurocan b [Source:ZFIN;Acc:ZDB-GENE-050208-586]
Coordinates
chr22:17842489-17853942:-
Coord C1 exon
chr22:17853860-17853942
Coord A exon
chr22:17853084-17853228
Coord C2 exon
chr22:17842489-17842671
Length
145 bp
Sequences
Splice sites
3' ss Seq
TATGTCCGTTTCTCCTCCAGCAA
3' ss Score
10.43
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAATGAGCCATGAAAACACATGGATTGGTCTGAACGACAGAATGGTTGAAGACGATTTCCAGTGGACCGACAACATGGACCTG
Seq A exon
CAATACGAGAACTGGAGGGAGAACCAGCCGGATAATTTCTTTGCAGGCGGAGAGGACTGCGTGGTGATGATCGCCCATGAGAACGGCAAGTGGAACGATGTGCCCTGCAACTACAACCTGCCCTACATCTGCAAGAAAGGCACAG
Seq C2 exon
TACTATGCGGAACTCCGCCCACCGTGGACAATGCTTTCCTGATTGGCCGGAAGCGTTCTCATTATGACATTCACTCTGTGGTGCGTTACCAGTGCGGCGATGGCTTCCTCCAGCGTCACGTCCCTACCGTGAAGTGCCGTGCCAACGGCAAATGGGACAGGCCCAAGATCATCTGCACGAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005783-'24-26,'24-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGATTGGTCTGAACGACA
R:
TTCGTGCAGATGATCTTGGGC
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]