BtaEX6037243 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8713830-8715590:+
Coord C1 exon
chr7:8713830-8713891
Coord A exon
chr7:8714657-8714727
Coord C2 exon
chr7:8715464-8715590
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGATGTCCCCCTCCCCACAGGGG
3' ss Score
11.84
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATCGGACCCCTGGAAAGACAGATCCAGAGGCTGCTGGCCCCCACCAGATCCACAATGTTCGT
Seq A exon
GGGCTGCTGAAGCGGTTGAAAGAGAAGAAAAAGGCCAAGTCAGAGCTAGGAGCCAGTGCTTCCCGAGATGG
Seq C2 exon
GCCCCCCAGTGCTCTGGGCTCCCGGGAATCGCTGGCCACGATTTCCGAACTGGACCTCGGAGCCGAGCGGGACGTGCGGGTCTGGCCACTGCACCCCAGCCTGCTGGAGGAGCCCCACTGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.750 C2=0.256
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(12.0=100)
A:
PF0016924=PH=FE(13.9=100)
C2:
PF0016924=PH=FE(25.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAGATCCAGAGGCTGCT
R:
AAGCAGTGGGGCTCCTCC
Band lengths:
171-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]