HsaEX0052401 @ hg19
Exon Skipping
Gene
ENSG00000105122 | RASAL3
Description
RAS protein activator like 3 [Source:HGNC Symbol;Acc:26129]
Coordinates
chr19:15569340-15571932:-
Coord C1 exon
chr19:15571871-15571932
Coord A exon
chr19:15571014-15571069
Coord C2 exon
chr19:15569340-15569466
Length
56 bp
Sequences
Splice sites
3' ss Seq
TGACATTCCCTTCCCCACAGGGG
3' ss Score
11.26
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATCGGATGCCTGGAAAAACAGAACCGGAGACTGCTGGTCCCAACCAGGTCCACAACGTTCGG
Seq A exon
GGGTTGCTCAAGAGGCTGAAAGAGAAGAAAAAGGCCAGGTTGGAGCCCCGGGATGG
Seq C2 exon
ACCCCCCAGTGCTCTGGGCTCTAGGGAGTCGCTGGCCACACTCTCTGAACTGGACCTGGGTGCCGAGCGGGATGTGCGGATCTGGCCACTGCACCCCAGCCTCCTGGGGGAGCCCCACTGCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105122-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.842 C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(16.1=73.7)
C2:
PF0016924=PH=FE(48.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAAAAACAGAACCGGA
R:
GTGGCCAGATCCGCACATC
Band lengths:
144-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)