DreEX6020337 @ danRer10
Exon Skipping
Gene
ENSDARG00000089933 | rasal3
Description
RAS protein activator like 3 [Source:ZFIN;Acc:ZDB-GENE-101130-3]
Coordinates
chr6:8242248-8242710:-
Coord C1 exon
chr6:8242643-8242710
Coord A exon
chr6:8242475-8242560
Coord C2 exon
chr6:8242248-8242374
Length
86 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTATTCTCATGCTAGGGT
3' ss Score
9.01
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
AGCTAAACCCAGATCCTGTGGTCCCCTCAAGTGGTACCAAATTAAAAGGGCAAGATGGCGGAGTCAAA
Seq A exon
GGTTTAATCAAGCGCCGCTTACAGGGTGATGATAAACGGAAAAGCAGCACCCAGCTCAATACTGCAGGATTAAGTGTTGCTGCAAG
Seq C2 exon
GTATGGTTCCAAAGAATCTTTATCCATCCCAGTCAGTGCTGCAAAGAGCCTTAATCTGAGTGCAGACCAGACCACTGTCATCAGGCCGGTCCACAGCTCTATTCTAGGGGAGAAGTACTGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089933-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.696 A=0.552 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(13.3=100)
A:
PF0016924=PH=FE(16.9=100)
C2:
PF0016924=PH=FE(25.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCAGATCCTGTGGTCCC
R:
AGAATAGAGCTGTGGACCGGC
Band lengths:
169-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]