MmuEX6076796 @ mm9
Exon Skipping
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32534439-32535923:-
Coord C1 exon
chr17:32535862-32535923
Coord A exon
chr17:32534966-32535036
Coord C2 exon
chr17:32534439-32534565
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATACCTCCCTGTCCCCTTAGAAG
3' ss Score
9.04
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TTCGGACCCCTGGAAAAACTGAGCCGGAAGCTGCTGGTTCCAACCAGGTCCACAATGTTCGG
Seq A exon
AAGTTACTCAAGAGGCTGAAGGAGAAGAAAAGAGCCAAGTCAGAACTGGGAGCCTACACCCCTCGAGATGG
Seq C2 exon
ACCTCCCAGTGCCCTCGGTTCCAGAGAATCGCTGGCCACACTCTCTGAGCTGGACCTAGGTGCTGAGAGGGACGTGAGAGTCTGGCCACTGCATCCTAGCCTCTTGGGGGAGCCCTACTGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142-'5-7,'5-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=0.483 C2=0.233
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(5.8=28.6)
A:
PF0016924=PH=PU(24.0=95.8)
C2:
PF0016924=PH=FE(43.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACCCCTGGAAAAACTGAG
R:
CTCCCCCAAGAGGCTAGGATG
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: