RnoEX6030746 @ rn6
Exon Skipping
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14410913-14414608:-
Coord C1 exon
chr7:14414547-14414608
Coord A exon
chr7:14411427-14411497
Coord C2 exon
chr7:14410913-14411039
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATCCCTCTCTGCCTCCGTAGAAG
3' ss Score
9.59
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TTCGGACTCCTGGGAAAATTGAGCCGGAAGCTACTGGTTCCAACCAGGTCCACAATGTTCGG
Seq A exon
AAGTTACTCAAGAGGCTGAAGGAGAAGAAAAGGGCCAAGTCGGAACTGGGAGCCCACACTCCTCGAGATGG
Seq C2 exon
ACCCTCCAGTGCTCTTGGTTCCAGAGAATCGCTGGCCACACTCTCTGAGCTGGACCTAGGCGTTGAGAGGGATGTGAGAGTCTGGCCGCTGCATCCTAGCCTCCTGGGGGAGCCATATTGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=0.625 C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(22.3=87.5)
C2:
PF0016924=PH=FE(44.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGAAAATTGAGCCGGAA
R:
CTGGAAGCAATATGGCTCCCC
Band lengths:
181-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]