BtaEX6038048 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16376249-16378987:+
Coord C1 exon
chr7:16376249-16376478
Coord A exon
chr7:16376633-16376810
Coord C2 exon
chr7:16378840-16378987
Length
178 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTGGGCTGTTCTCAGGGA
3' ss Score
7.61
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CGTCCAGTGAGAATTTTTGTGAATGATGATCGCCATGTGATGGCAAAGCACTCTTCCGTTTACCCAACACAAGAGGAGCTGGAGGCAGTCCAGAACATGGTGTCCCACACAGAGCGGGCTCTCAAAGCTGTGTCTGACTGGATCGATGAGCAAGAGAAAGGCAGCAGCGACCATGCCGAGTCTGAGAATGTGGATGTGCCTGCGGAAGACGAGGGCAAAGAAGGGGCTGG
Seq A exon
GGAGCAGAAGACAGAGCACATGACCAGAACCCTGAGGGGAGTGATGCGTGTTGGCCTCGTGGCAAAGGGCCTACTGCTCAAGGGGGACTTGGACTTGGAGTTGGTGCTGCTGTGTAAGGAGAAGCCCACAACTGCCCTCCTGGACAAGGTGGCTGACAACCTGGCCATCCAGCTCACT
Seq C2 exon
GCTGTCACAGATGACAAGTATGAAATACTCCAGTCTGTTGATGACGCTGCGATTGTGATAAAAAACACAAAAGAGCCTCCATTGTCCTTGACCATCCACCTGACCTCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.649 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF075289=DZF=PU(17.3=71.7)
C2:
PF075289=DZF=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAAGCACTCTTCCGTTT
R:
TCACAATCGCAGCGTCATCAA
Band lengths:
248-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]