RnoEX0043975 @ rn6
Exon Skipping
Gene
ENSRNOG00000022741 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:RGD Symbol;Acc:619734]
Coordinates
chr8:22424311-22428037:+
Coord C1 exon
chr8:22424311-22424540
Coord A exon
chr8:22424992-22425169
Coord C2 exon
chr8:22427890-22428037
Length
178 bp
Sequences
Splice sites
3' ss Seq
GACTTTTGTCTGTCTCTCAGGGA
3' ss Score
9.79
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CGTCCCATGAGAATTTTTGTGAATGATGATCGCCATGTGATGGCAAAGCATTCTTCAGTATACCCAACACAAGAGGAGCTGGAGGCTGTACAGAACATGGTGTCCCACACTGAGCGGGCCCTCAAGGCTGTCTCTGACTGGATTGATGAGCAGGAGAAAGGCAACAGCGAGCTCTCTGAAGCAGAAAATATGGACACACCCCCAGATGATGAGAGCAAAGAAGGGGCTGG
Seq A exon
GGAACAGAAGGCGGAACACATGACTAGGACCCTGAGGGGCGTGATGCGGGTCGGCCTGGTAGCCAAGGGTCTTCTGCTCAAGGGGGACTTGGATCTGGAGCTGGTTCTGCTCTGTAAGGAGAAGCCCACAACTGCCCTTCTGGACAAGGTGGCTGACAACCTGGCCATCCAGCTTACT
Seq C2 exon
ACTGTAACAGAAGACAAGTATGAAATACTCCAATCTGTGGATGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCCCCCTTGTCCTTGACCATCCATCTGACCTCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022741_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
86%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF075289=DZF=PU(17.3=71.7)
C2:
PF075289=DZF=FE(19.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAACATGGTGTCCCACAC
R:
ACAGGGGAGGTCAGATGGATG
Band lengths:
254-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]