GgaEX1056186 @ galGal3
Exon Skipping
Gene
ENSGALG00000001187 | STRBP_CHICK
Description
NA
Coordinates
chr17:9633162-9639962:-
Coord C1 exon
chr17:9639745-9639962
Coord A exon
chr17:9635745-9635910
Coord C2 exon
chr17:9633162-9633306
Length
166 bp
Sequences
Splice sites
3' ss Seq
CAGAATTATTTCATTTCCAGGGA
3' ss Score
6.93
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGATCTATCCGATCTTTTGCTAACGATGACCGCCATGTTATGGTGAAACATTCAACCATTTATCCATCTCCAGAAGAACTTGAAGCTGTCCAGAACATGGTATCAACAGTAGAATGTGCCCTTAAACATGTGTCTGACTGGATGGATGAAAAGAACAAGTCTGTAAAATGTGAGGGTGATGTGGAAGCAAAAGAGGAAGCTGCAGAAAGCAATGCCAA
Seq A exon
GGATCAAAGTGGTCGGACCTTGTGTGGTGTTATGAGAATTGGCTTGGTTGCAAAGGGTTTGCTGATAAAAGATGATATGGATTTGGAGCTGGTTCTCATGTGCAAAGAAAAACCCACAAAGACCTTACTATGTATAGTCAAAGACAATCTCCCCATTCAAATTCAG
Seq C2 exon
AAACTTACAGAAGAGAAGTATCTCGTGGAGGAGCATGTAAATGAGGCAGCTATTATTATTCGTAACACAAAGGAGCCCAAGCTAACCTTGAAGGTGATACTTACGTCCCCTCTCATTCGAGATGAAGCAGAGAAGAAGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187-'1-8,'1-6,7-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=0.009 C2=0.051
Domain overlap (PFAM):
C1:
PF142301=DUF4333=WD(100=60.3)
A:
PF075289=DZF=PU(17.3=76.8)
C2:
PF075289=DZF=FE(19.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGCTAACGATGACCGCCA
R:
GCTGCCTCATTTACATGCTCCT
Band lengths:
254-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]