RnoEX0087155 @ rn6
Exon Skipping
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21888304-21898496:-
Coord C1 exon
chr3:21898276-21898496
Coord A exon
chr3:21894168-21894333
Coord C2 exon
chr3:21888304-21888448
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATATAAGTTTTTATTTGTAGGGA
3' ss Score
5.84
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCTTCTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGGGAGACAGAAGTAAAGAAAGATGACGCTGTGGAAAACTATTCCAA
Seq A exon
GGATCAAGGTGGCCGGACATTGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGACATGGACCTGGAGCTGGTCTTAATGTGTAAAGACAAACCCACAGAAACTCTGCTAAATACAGTGAAAGATAACCTTCCTATTCAAATTCAG
Seq C2 exon
AAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAGCGTCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150-'3-9,'3-7,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
PF075289=DZF=PU(17.3=76.8)
C2:
PF075289=DZF=PD(50.5=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGAACTTGAAGCTGTGCA
R:
ACCTTCAAAGTCAGTGTTGGCT
Band lengths:
246-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]